https://peterponyu.github.io/scCCVGBen/datasets/Recent content in Datasets on scCCVGBen — single-cell scCCVGBen BenchmarkHugo -- gohugo.ioen-ushttps://peterponyu.github.io/scCCVGBen/datasets/gse115571/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse115571/GSE115571 # Field Value Dataset ID GSE115571 GSE / GSM accession GSE115571 Modality scRNA Species mouse Tissue brain Cell count 19,998 PubMed [PMID:30206190; 39014482](https://pubmed.ncbi.nlm.nih.gov/30206190; 39014482/) Submission date Jun 11 2018 Source name (GEO) microglia isolated from saline control mice GEO title # Single-cell transcriptomics reveals distinct microglia signatures under inflammation Description (local manifest) # Single-cell transcriptomics reveals distinct microglia signatures under inflammation Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse117988/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse117988/GSE117988 # Field Value Dataset ID GSE117988 GSE / GSM accession GSE117988 Modality scRNA Species human Tissue pbmc Cell count 12,874 PubMed PMID:30250229 Submission date Aug 01 2018 Source name (GEO) Tumor GEO title # scRNAseq reveals mechanisms of Merkel cell carcinoma acquired immunotherapy resistance [1] Description (local manifest) # scRNAseq reveals mechanisms of Merkel cell carcinoma acquired immunotherapy resistance [1] Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse120505/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse120505/GSE120505 # Field Value Dataset ID GSE120505 GSE / GSM accession GSE120505 Modality scRNA Species mouse Tissue blood Cell count 14,588 PubMed PMID:36622281 Submission date Sep 26 2018 Source name (GEO) peripheral blood GEO title # Single-cell RNA seq of aging peripheral blood Description (local manifest) # Single-cell RNA seq of aging peripheral blood Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse123813/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse123813/GSE123813 # Field Value Dataset ID GSE123813 GSE / GSM accession GSE123813 Modality scRNA Species human Tissue tumor Cell count 53,030 PubMed PMID:31359002 Submission date Dec 13 2018 Source name (GEO) Basal cell carinoma tumor GEO title # Clonal replacement of tumor-specific T cells following PD-1 blockade [single cells] Description (local manifest) # Clonal replacement of tumor-specific T cells following PD-1 blockade [single cells] Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse123902/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse123902/GSE123902 # Field Value Dataset ID GSE123902 GSE / GSM accession GSE123902 Modality scRNA Species human Tissue lung Cell count 42,847 PubMed PMID:32042191 Submission date Dec 16 2018 Source name (GEO) Patient primary lung adenocarcinoma GEO title # The single cell transcriptional landscape of human lung adenocarcinoma (primary tumours and metastases) Description (local manifest) # The single cell transcriptional landscape of human lung adenocarcinoma (primary tumours and metastases) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse124310/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse124310/GSE124310 # Field Value Dataset ID GSE124310 GSE / GSM accession GSE124310 Modality scRNA Species human Tissue tumor Cell count 27,796 PubMed PMID:33409501 Submission date Dec 23 2018 Source name (GEO) Bone Marrow GEO title # Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma Description (local manifest) # Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse130148/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse130148/GSE130148 # Field Value Dataset ID GSE130148 GSE / GSM accession GSE130148 Modality scRNA Species human Tissue lung Cell count 10,360 PubMed PMID:31209336 Submission date Apr 22 2019 Source name (GEO) Parenchymal lung tissue GEO title # Single cell RNA sequencing analysis of fresh resected human lung tissue Description (local manifest) # Single cell RNA sequencing analysis of fresh resected human lung tissue Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse130646/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse130646/GSE130646 # Field Value Dataset ID GSE130646 GSE / GSM accession GSE130646 Modality scRNA Species human Tissue muscle Cell count 2,876 PubMed PMID:31937892 Submission date May 02 2019 Source name (GEO) Vastus Lateralis Biopsy Mononuclear Cells GEO title # Single-cell transcriptional profiles in human skeletal muscle Description (local manifest) # Single-cell transcriptional profiles in human skeletal muscle Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse132509/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse132509/GSE132509 # Field Value Dataset ID GSE132509 GSE / GSM accession GSE132509 Modality scRNA Species human Tissue pbmc Cell count 39,375 PubMed PMID:32415257 Submission date Jun 10 2019 Source name (GEO) ETV6-RUNX1 GEO title # Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity Description (local manifest) # Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneityhttps://peterponyu.github.io/scCCVGBen/datasets/gse138709/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse138709/GSE138709 # Field Value Dataset ID GSE138709 GSE / GSM accession GSE138709 Modality scRNA Species human Tissue liver Cell count 33,991 PubMed — Submission date Oct 10 2019 Source name (GEO) adjacent GEO title # Dissecting the transcriptomic landscape of the human intrahepatic cholangiocarcinoma by single cell RNA-sequencing Description (local manifest) # Dissecting the transcriptomic landscape of the human intrahepatic cholangiocarcinoma by single cell RNA-sequencing Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse142653/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse142653/GSE142653 # Field Value Dataset ID GSE142653 GSE / GSM accession GSE142653 Modality scRNA Species human Tissue other Cell count 5,181 PubMed [PMID:33077725; 36754052](https://pubmed.ncbi.nlm.nih.gov/33077725; 36754052/) Submission date Dec 27 2019 Source name (GEO) fetal pituitary cells GEO title # Single-cell Transcriptomics Reveals the Divergent Developmental Lineage Trajectories during Human Pituitary Development Description (local manifest) # Single-cell Transcriptomics Reveals the Divergent Developmental Lineage Trajectories during Human Pituitary Development Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse143423/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse143423/GSE143423 # Field Value Dataset ID GSE143423 GSE / GSM accession GSE143423 Modality scRNA Species human Tissue brain Cell count 12,196 PubMed PMID:39311908 Submission date Jan 10 2020 Source name (GEO) brain GEO title # Single-Cell Map of Diverse Immune Phenotypes in the Metastatic Brain Tumor Microenvironment of Non Small Cell Lung Cancer and triple negative breast cancer Description (local manifest) # Single-Cell Map of Diverse Immune Phenotypes in the Metastatic Brain Tumor Microenvironment of Non Small Cell Lung Cancer and triple negative breast cancerhttps://peterponyu.github.io/scCCVGBen/datasets/gse145929/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse145929/GSE145929 # Field Value Dataset ID GSE145929 GSE / GSM accession GSE145929 Modality scRNA Species mouse Tissue bladder Cell count 61,014 PubMed PMID:32497356 Submission date Feb 25 2020 Source name (GEO) Viable mouse prostate GEO title # Single-cell RNA-sequencing of adult mouse lower urinary tracts Description (local manifest) # Single-cell RNA-sequencing of adult mouse lower urinary tracts Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse148215/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse148215/GSE148215 # Field Value Dataset ID GSE148215 GSE / GSM accession GSE148215 Modality scRNA Species human Tissue stem_cell Cell count 10,110 PubMed PMID:33298886 Submission date Apr 07 2020 Source name (GEO) human embryonic cells GEO title # Characterization and generation of human definitive multipotent hematopoietic stem/progenitor cells Description (local manifest) # Characterization and generation of human definitive multipotent hematopoietic stem/progenitor cells Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse148218/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse148218/GSE148218 # Field Value Dataset ID GSE148218 GSE / GSM accession GSE148218 Modality scRNA Species human Tissue tumor Cell count 50,747 PubMed PMID:33218352 Submission date Apr 07 2020 Source name (GEO) Primary pre-B-ALL BM GEO title # Single cell characterization of arrested B-lymphoid differentiation and leukemic cell states in ETV6-RUNX1-positive pediatric leukemia Description (local manifest) # Single cell characterization of arrested B-lymphoid differentiation and leukemic cell states in ETV6-RUNX1-positive pediatric leukemiahttps://peterponyu.github.io/scCCVGBen/datasets/gse149655/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse149655/GSE149655 # Field Value Dataset ID GSE149655 GSE / GSM accession GSE149655 Modality scRNA Species human Tissue tumor Cell count 13,060 PubMed PMID:32891189 Submission date Apr 30 2020 Source name (GEO) lung distal normal tissue from patient 01 GEO title # Single cell RNAseq of human early stage lung adenocarcinoma with activating somatic KRAS mutations and associated normal lung tissues reveals alterations of key gene expression in alveolar type II pneumocyteshttps://peterponyu.github.io/scCCVGBen/datasets/gse155109/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse155109/GSE155109 # Field Value Dataset ID GSE155109 GSE / GSM accession GSE155109 Modality scRNA Species human Tissue tumor Cell count 8,433 PubMed PMID:36127427 Submission date Jul 24 2020 Source name (GEO) breast_1z GEO title # Single cell atlas identifies lipid-processing and immunomodulatory endothelial cells in healthy and malignant breast Description (local manifest) # Single cell atlas identifies lipid-processing and immunomodulatory endothelial cells in healthy and malignant breast Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse165784/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse165784/GSE165784 # Field Value Dataset ID GSE165784 GSE / GSM accession GSE165784 Modality scRNA Species human Tissue retina Cell count 11,492 PubMed PMID:35061025 Submission date Jan 29 2021 Source name (GEO) Fibrous membrane_PVR GEO title # Single-cell RNA-sequencing reveals the heterogeneity of microglia in fibrous membrane derived from proliferative diabetic retinopathy and proliferative vitreoretinopathy Description (local manifest) # Single-cell RNA-sequencing reveals the heterogeneity of microglia in fibrous membrane derived from proliferative diabetic retinopathy and proliferative vitreoretinopathyhttps://peterponyu.github.io/scCCVGBen/datasets/gse165844/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse165844/GSE165844 # Field Value Dataset ID GSE165844 GSE / GSM accession GSE165844 Modality scRNA Species mouse Tissue bone_marrow Cell count 19,791 PubMed PMID:34939923 Submission date Jan 30 2021 Source name (GEO) FACS sorted bone marrow GEO title # External signals regulate continuous transcriptional states in hematopoietic stem cells Description (local manifest) # External signals regulate continuous transcriptional states in hematopoietic stem cells Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse167597/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse167597/GSE167597 # Field Value Dataset ID GSE167597 GSE / GSM accession GSE167597 Modality scRNA Species mouse Tissue brain Cell count 16,042 PubMed PMID:37559423 Submission date Feb 26 2021 Source name (GEO) Cervical spinal cord GEO title # Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord Description (local manifest) # Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cordhttps://peterponyu.github.io/scCCVGBen/datasets/gse168181/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse168181/GSE168181 # Field Value Dataset ID GSE168181 GSE / GSM accession GSE168181 Modality scRNA Species mouse Tissue tumor Cell count 23,556 PubMed PMID:37341991 Submission date Mar 03 2021 Source name (GEO) inguinal lymph node GEO title # Single-cell sequencing reveals cancer cell heterogeneity in a murine breast cancer lymph node metastasis model Description (local manifest) # Single-cell sequencing reveals cancer cell heterogeneity in a murine breast cancer lymph node metastasis modelhttps://peterponyu.github.io/scCCVGBen/datasets/gse183904/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse183904/GSE183904 # Field Value Dataset ID GSE183904 GSE / GSM accession GSE183904 Modality scRNA Species human Tissue tumor Cell count 62,035 PubMed PMID:34642171 Submission date Sep 10 2021 Source name (GEO) Stomach GEO title # Single-cell atlas of lineage states, tumor microenvironment and subtype specific expression programs in gastric cancer Description (local manifest) # Single-cell atlas of lineage states, tumor microenvironment and subtype specific expression programs in gastric cancerhttps://peterponyu.github.io/scCCVGBen/datasets/gse189070/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse189070/GSE189070 # Field Value Dataset ID GSE189070 GSE / GSM accession GSE189070 Modality scRNA Species mouse Tissue brain Cell count 103,446 PubMed PMID:35816276 Submission date Nov 18 2021 Source name (GEO) uninjured spinal cord tissue GEO title # Heterogeneity analysis of astrocytes following spinal cord injury at single-cell resolution Description (local manifest) # Heterogeneity analysis of astrocytes following spinal cord injury at single-cell resolution Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse189357/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse189357/GSE189357 # Field Value Dataset ID GSE189357 GSE / GSM accession GSE189357 Modality scRNA Species human Tissue lung Cell count 45,938 PubMed PMID:36434043 Submission date Nov 22 2021 Source name (GEO) Lung adenocarcinoma GEO title # Spatiotemporal transcriptional atlas of lung adenocarcinoma from adenocarcinoma in situ to invasive carcinoma [scRNA-seq] Description (local manifest) # Spatiotemporal transcriptional atlas of lung adenocarcinoma from adenocarcinoma in situ to invasive carcinoma [scRNA-seq] Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse192857/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse192857/GSE192857 # Field Value Dataset ID GSE192857 GSE / GSM accession GSE192857 Modality scRNA Species human Tissue stem_cell Cell count 11,067 PubMed [PMID:36304110; 37731623](https://pubmed.ncbi.nlm.nih.gov/36304110; 37731623/) Submission date Dec 31 2021 Source name (GEO) HS360, day 0, hESCs undifferentiated GEO title # Gene expression analysis of hESCs undergoing neuronal differentiation [scRNA-seq] Description (local manifest) # Gene expression analysis of hESCs undergoing neuronal differentiation [scRNA-seq] Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse213740/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse213740/GSE213740 # Field Value Dataset ID GSE213740 GSE / GSM accession GSE213740 Modality scRNA Species human Tissue other Cell count 23,871 PubMed PMID:36830768 Submission date Sep 20 2022 Source name (GEO) Ascending aortic wall tissue GEO title # Single-Cell RNA-Seq Analysis Reveals Macrophage Involved in Pathogenesis of Human sporadic type A aortic dissection Description (local manifest) # Single-Cell RNA-Seq Analysis Reveals Macrophage Involved in Pathogenesis of Human sporadic type A aortic dissectionhttps://peterponyu.github.io/scCCVGBen/datasets/gse222002/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse222002/GSE222002 # Field Value Dataset ID GSE222002 GSE / GSM accession GSE222002 Modality scRNA Species mouse Tissue tumor Cell count 78,315 PubMed PMID:38609488 Submission date Jan 02 2023 Source name (GEO) TME GEO title # Targeting tumor cells toward the antigenic specificity of bystander T cells in tumor microenvironment potentiates cancer immunotherapy Description (local manifest) # Targeting tumor cells toward the antigenic specificity of bystander T cells in tumor microenvironment potentiates cancer immunotherapyhttps://peterponyu.github.io/scCCVGBen/datasets/gse222369/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse222369/GSE222369 # Field Value Dataset ID GSE222369 GSE / GSM accession GSE222369 Modality scRNA Species human Tissue tumor Cell count 138,805 PubMed PMID:37467318 Submission date Jan 07 2023 Source name (GEO) blood GEO title # Nicotinamide enhances natural killer cell function and yields remissions in patients with non-Hodgkin lymphoma Description (local manifest) # Nicotinamide enhances natural killer cell function and yields remissions in patients with non-Hodgkin lymphoma Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse225600/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse225600/GSE225600 # Field Value Dataset ID GSE225600 GSE / GSM accession GSE225600 Modality scRNA Species human Tissue tumor Cell count 81,683 PubMed PMID:36594618 Submission date Feb 19 2023 Source name (GEO) human breast cancer GEO title # Single-cell profiling and spatial transcriptome of primary tumors and paired metastatic lymph nodes in breast cancer patients Description (local manifest) # Single-cell profiling and spatial transcriptome of primary tumors and paired metastatic lymph nodes in breast cancer patientshttps://peterponyu.github.io/scCCVGBen/datasets/gse225857/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse225857/GSE225857 # Field Value Dataset ID GSE225857 GSE / GSM accession GSE225857 Modality scRNA Species human Tissue liver Cell count 22,260 PubMed PMID:37327339 Submission date Feb 22 2023 Source name (GEO) colorectal and liver tissues GEO title # Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer Description (local manifest) # Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancerhttps://peterponyu.github.io/scCCVGBen/datasets/gse226131/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse226131/GSE226131 # Field Value Dataset ID GSE226131 GSE / GSM accession GSE226131 Modality scRNA Species mouse Tissue bone_marrow Cell count 15,793 PubMed PMID:37069150 Submission date Feb 26 2023 Source name (GEO) Bone Marrow GEO title # Single-cell RNA sequencing of hematopoietic stem and progenitor cells from young and aged mice Description (local manifest) # Single-cell RNA sequencing of hematopoietic stem and progenitor cells from young and aged mice Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse228499/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse228499/GSE228499 # Field Value Dataset ID GSE228499 GSE / GSM accession GSE228499 Modality scRNA Species human Tissue tumor Cell count 32,349 PubMed PMID:38892065 Submission date Mar 29 2023 Source name (GEO) primary breast cancer GEO title # Single cell RNA sequencing of primary breast cancer Description (local manifest) # Single cell RNA sequencing of primary breast cancer Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse235787/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse235787/GSE235787 # Field Value Dataset ID GSE235787 GSE / GSM accession GSE235787 Modality scRNA Species human Tissue tumor Cell count 113,495 PubMed PMID:38593781 Submission date Jun 26 2023 Source name (GEO) Peripheral blood GEO title # Single-cell network pharmacology predicts total therapies targeting multiple developmental clones in B-cell acute lymphoblastic leukemia Description (local manifest) # Single-cell network pharmacology predicts total therapies targeting multiple developmental clones in B-cell acute lymphoblastic leukemiahttps://peterponyu.github.io/scCCVGBen/datasets/gse247719/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse247719/GSE247719 # Field Value Dataset ID GSE247719 GSE / GSM accession GSE247719 Modality scRNA Species mouse Tissue muscle Cell count 696,410 PubMed PMID:39607904 Submission date Nov 14 2023 Source name (GEO) kidney GEO title # A Panoramic View of Cell Population Dynamics in Mammalian Aging Description (local manifest) # A Panoramic View of Cell Population Dynamics in Mammalian Aging Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse253355/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse253355/GSE253355 # Field Value Dataset ID GSE253355 GSE / GSM accession GSE253355 Modality scRNA Species human Tissue bone_marrow Cell count 99,846 PubMed PMID:38714197 Submission date Jan 16 2024 Source name (GEO) Bone marrow GEO title # Mapping the Cellular Biogeography of Human Bone Marrow Niches Using Single-Cell Transcriptomics Description (local manifest) # Mapping the Cellular Biogeography of Human Bone Marrow Niches Using Single-Cell Transcriptomics Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse255019/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse255019/GSE255019 # Field Value Dataset ID GSE255019 GSE / GSM accession GSE255019 Modality scRNA Species mouse Tissue bone_marrow Cell count 22,602 PubMed [PMID:38749423; 40987296](https://pubmed.ncbi.nlm.nih.gov/38749423; 40987296/) Submission date Feb 04 2024 Source name (GEO) Bone Marrow GEO title # An age specific platelet differentiation path from hematopoietic stem cells causes thrombocytosis and exacerbated thrombosis Description (local manifest) # An age specific platelet differentiation path from hematopoietic stem cells causes thrombocytosis and exacerbated thrombosishttps://peterponyu.github.io/scCCVGBen/datasets/gse262288/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse262288/GSE262288 # Field Value Dataset ID GSE262288 GSE / GSM accession GSE262288 Modality scRNA Species human Tissue tumor Cell count 157,518 PubMed PMID:39955556 Submission date Mar 22 2024 Source name (GEO) Pleural effusion GEO title # Single-Cell RNA Sequencing Identifies Molecular Biomarkers Predicting Response to CDK4/6 Inhibition in Metastatic HR+/HER2- Breast Cancer Description (local manifest) # Single-Cell RNA Sequencing Identifies Molecular Biomarkers Predicting Response to CDK4/6 Inhibition in Metastatic HR+/HER2- Breast Cancerhttps://peterponyu.github.io/scCCVGBen/datasets/gse275119/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse275119/GSE275119 # Field Value Dataset ID GSE275119 GSE / GSM accession GSE275119 Modality scRNA Species mouse Tissue other Cell count 6,764 PubMed PMID:39920788 Submission date Aug 18 2024 Source name (GEO) Incisor Pulp GEO title # Decoding SFRP2hi Fibroblast Progenitors in Sustaining Tooth Growth in Humans and Mice at Single-Cell Resolution Description (local manifest) # Decoding SFRP2hi Fibroblast Progenitors in Sustaining Tooth Growth in Humans and Mice at Single-Cell Resolutionhttps://peterponyu.github.io/scCCVGBen/datasets/gse283205/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse283205/GSE283205 # Field Value Dataset ID GSE283205 GSE / GSM accession GSE283205 Modality scRNA Species human Tissue tumor Cell count 16,506 PubMed PMID:39900120 Submission date Nov 29 2024 Source name (GEO) Formalin-fixed paraffin-embedded hepatoblastoma GEO title # Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [snRNA-seq] Description (local manifest) # Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [snRNA-seq]https://peterponyu.github.io/scCCVGBen/datasets/gse98638/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse98638/GSE98638 # Field Value Dataset ID GSE98638 GSE / GSM accession GSE98638 Modality scRNA Species human Tissue liver Cell count 5,063 PubMed PMID:28622514 Submission date May 08 2017 Source name (GEO) T cells GEO title # Landscape of infiltrating T cells in liver cancer revealed by single-cell sequencing Description (local manifest) # Landscape of infiltrating T cells in liver cancer revealed by single-cell sequencing Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse120446/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse120446/GSE120446 # Field Value Dataset ID GSE120446 GSE / GSM accession GSE120446 Modality scRNA Species human Tissue bone_marrow Cell count 90,653 PubMed PMID:30518681 Submission date Sep 25 2018 Source name (GEO) Bone marrow GEO title # Human Bone Marrow Assessment by Single Cell RNA Sequencing, Mass Cytometry and Flow Cytometry Description (local manifest) # Human Bone Marrow Assessment by Single Cell RNA Sequencing, Mass Cytometry and Flow Cytometry Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse95753/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse95753/GSE95753 # Field Value Dataset ID GSE95753 GSE / GSM accession GSE95753 Modality scRNA Species mouse Tissue brain Cell count 18,213 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # dentate Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse132188/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse132188/GSE132188 # Field Value Dataset ID GSE132188 GSE / GSM accession GSE132188 Modality scRNA Species mouse Tissue other Cell count 2,531 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # endo Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse84133/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse84133/GSE84133 # Field Value Dataset ID GSE84133 GSE / GSM accession GSE84133 Modality scRNA Species human Tissue pancreas Cell count 8,569 PubMed PMID:27667365 Submission date Jul 07 2016 Source name (GEO) Male donor, age 17, BMI: 21.5 GEO title # A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure Description (local manifest) # A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structurehttps://peterponyu.github.io/scCCVGBen/datasets/gse144024/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse144024/GSE144024 # Field Value Dataset ID GSE144024 GSE / GSM accession GSE144024 Modality scRNA Species human Tissue stem_cell Cell count 9,485 PubMed PMID:33340451 Submission date Jan 21 2020 Source name (GEO) human embryonic cells GEO title # Decoding Human Megakaryocyte Development Description (local manifest) # Decoding Human Megakaryocyte Development Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse226824/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse226824/GSE226824 # Field Value Dataset ID GSE226824 GSE / GSM accession GSE226824 Modality scRNA Species mouse Tissue bone_marrow Cell count 13,310 PubMed PMID:38110222 Submission date Mar 07 2023 Source name (GEO) Bone Marrow GEO title # Time series single-cell RNA sequencing of murine hematopoetic stem and progenitors (HSPCs) following in vivo IFNα treatment Description (local manifest) # ifnHSPC_GSE226824 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse141259/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse141259/GSE141259 # Field Value Dataset ID GSE141259 GSE / GSM accession GSE141259 Modality scRNA Species mouse Tissue lung Cell count 24,882 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # lung Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/ds-scrna-047/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/ds-scrna-047/ds-scrna-047 # Field Value Dataset ID ds-scrna-047 GSE / GSM accession PRJEB37166 Modality scRNA Species human Tissue other Cell count 5,780 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # setty Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse185538/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse185538/GSE185538 # Field Value Dataset ID GSE185538 GSE / GSM accession GSE185538 Modality scRNA Species rat Tissue embryo Cell count 24,573 PubMed PMID:35874099 Submission date Oct 07 2021 Source name (GEO) P7 rat brain GEO title # Single-nucleus chromatin accessibility and RNA-seq reveal impaired brain development in prenatal e-cigarette exposed neonatal rats Description (local manifest) # GEO cellranger download (24573 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse130430/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse130430/GSE130430 # Field Value Dataset ID GSE130430 GSE / GSM accession GSE130430 Modality scRNA Species human Tissue bone_marrow Cell count 886 PubMed PMID:31477722 Submission date Apr 29 2019 Source name (GEO) Bone marrow GEO title # The Developmental Heterogeneity of Human Natural Killer Cells Defined by Single-cell Transcriptome Description (local manifest) # GEO cellranger download (886 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse155249/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse155249/GSE155249 # Field Value Dataset ID GSE155249 GSE / GSM accession GSE155249 Modality scRNA Species human Tissue breast Cell count 3,595 PubMed PMID:33429418 Submission date Jul 28 2020 Source name (GEO) Sorted macrophages and T cells GEO title # Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia Description (local manifest) # GEO cellranger download (3595 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse205506/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse205506/GSE205506 # Field Value Dataset ID GSE205506 GSE / GSM accession GSE205506 Modality scRNA Species human Tissue neuro Cell count 1,666 PubMed [PMID:37172580; 39055918](https://pubmed.ncbi.nlm.nih.gov/37172580; 39055918/) Submission date Jun 06 2022 Source name (GEO) colon GEO title # Remodeling of the Immune and Stromal Cell Compartment by PD-1 Blockade in Mismatch Repair-Deficient Colorectal Cancer Description (local manifest) # GEO cellranger download (1666 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse139324/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse139324/GSE139324 # Field Value Dataset ID GSE139324 GSE / GSM accession GSE139324 Modality scRNA Species human Tissue hnscc Cell count 1,725 PubMed [PMID:31924475; 34099645; 41661401](https://pubmed.ncbi.nlm.nih.gov/31924475; 34099645; 41661401/) Submission date Oct 24 2019 Source name (GEO) peripheral blood GEO title # Immune landscape of viral- and carcinogen-drived head and neck cancer Description (local manifest) # GEO cellranger download (1725 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse167118/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse167118/GSE167118 # Field Value Dataset ID GSE167118 GSE / GSM accession GSE167118 Modality scRNA Species human Tissue brain Cell count 3,273 PubMed PMID:33622974 Submission date Feb 19 2021 Source name (GEO) blood GEO title # Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lung of severe COVID-19 patients Description (local manifest) # GEO cellranger download (3273 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse162454/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse162454/GSE162454 # Field Value Dataset ID GSE162454 GSE / GSM accession GSE162454 Modality scRNA Species human Tissue liver Cell count 8,894 PubMed [PMID:34367994; 36507075; 38755647; 41413734](https://pubmed.ncbi.nlm.nih.gov/34367994; 36507075; 38755647; 41413734/) Submission date Dec 01 2020 Source name (GEO) Tumor tissue GEO title # Single-cell RNA sequencing of human osteosarcoma Description (local manifest) # GEO cellranger download (8894 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse145926/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse145926/GSE145926 # Field Value Dataset ID GSE145926 GSE / GSM accession GSE145926 Modality scRNA Species human Tissue balf Cell count 6,249 PubMed [PMID:32398875; 39369126](https://pubmed.ncbi.nlm.nih.gov/32398875; 39369126/) Submission date Feb 25 2020 Source name (GEO) BALF GEO title # Single-cell landscape of bronchoalveolar immune cells in COVID-19 patients Description (local manifest) # GEO cellranger download (6249 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse166635/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse166635/GSE166635 # Field Value Dataset ID GSE166635 GSE / GSM accession GSE166635 Modality scRNA Species human Tissue brain Cell count 16,077 PubMed PMID:33619115 Submission date Feb 11 2021 Source name (GEO) liver cancer GEO title # TNFR2 HnRNPK-YAP Signaling Axis Promotes Primary Liver Cancer Development in Hepatic Progenitor Cells Description (local manifest) # GEO cellranger download (16077 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse163558/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse163558/GSE163558 # Field Value Dataset ID GSE163558 GSE / GSM accession GSE163558 Modality scRNA Species human Tissue stomach Cell count 2,866 PubMed PMID:35184420 Submission date Dec 20 2020 Source name (GEO) primary gastric cancer GEO title # Transcriptional heterogeneity in primary and metastatic gastric cancer revealed using single-cell RNA sequencing Description (local manifest) # GEO cellranger download (2866 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse164378/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse164378/GSE164378 # Field Value Dataset ID GSE164378 GSE / GSM accession GSE164378 Modality scRNA Species human Tissue pbmc Cell count 161,764 PubMed PMID:34062119 Submission date Jan 07 2021 Source name (GEO) PBMC GEO title # Integrated analysis of multimodal single-cell data Description (local manifest) # GEO cellranger download (161764 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse149689/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse149689/GSE149689 # Field Value Dataset ID GSE149689 GSE / GSM accession GSE149689 Modality scRNA Species human Tissue blood Cell count 85,144 PubMed [PMID:32651212; 36229591](https://pubmed.ncbi.nlm.nih.gov/32651212; 36229591/) Submission date May 01 2020 Source name (GEO) nCoV_PBMC GEO title # Immunophenotyping of COVID-19 and Influenza Underscores the Association of Type I IFN Response in Severe COVID-19 Description (local manifest) # GEO cellranger download (85144 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse151530/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse151530/GSE151530 # Field Value Dataset ID GSE151530 GSE / GSM accession GSE151530 Modality scRNA Species human Tissue liver Cell count 56,721 PubMed [PMID:34216724; 31588021](https://pubmed.ncbi.nlm.nih.gov/34216724; 31588021/) Submission date Jun 01 2020 Source name (GEO) Primary liver cancer single-cell GEO title # Understanding tumor evolution and its clonality by single-cell transcriptomic analysis in liver cancer Description (local manifest) # GEO cellranger download (56721 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse158803/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse158803/GSE158803 # Field Value Dataset ID GSE158803 GSE / GSM accession GSE158803 Modality scRNA Species human Tissue neural Cell count 1,092 PubMed PMID:34548323 Submission date Sep 30 2020 Source name (GEO) brain metastasis GEO title # A Single-Cell Tumor Immune Atlas for Precision Oncology Description (local manifest) # GEO cellranger download (1092 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse163484/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse163484/GSE163484 # Field Value Dataset ID GSE163484 GSE / GSM accession GSE163484 Modality scRNA Species mouse Tissue brain Cell count 8,203 PubMed PMID:33846645 Submission date Dec 18 2020 Source name (GEO) P21 Brain GEO title # Single cell RNA-seq of Sox10-Cre::GFP+ population Description (local manifest) # GEO cellranger download (8203 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse175814/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse175814/GSE175814 # Field Value Dataset ID GSE175814 GSE / GSM accession GSE175814 Modality scRNA Species human Tissue lung Cell count 6,223 PubMed PMID:36827281 Submission date May 30 2021 Source name (GEO) Brain GEO title # Single cell RNA sequencing analysis of human Alzheimer’s disease brain samples reveal neuronal and glial specific cells differential expression Description (local manifest) # GEO cellranger download (6223 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse181061/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse181061/GSE181061 # Field Value Dataset ID GSE181061 GSE / GSM accession GSE181061 Modality scRNA Species human Tissue kidney Cell count 108,421 PubMed PMID:35668194 Submission date Jul 28 2021 Source name (GEO) Donor GEO title # A single-cell map of dynamic chromatin landscapes of immune cells in renal cell carcinoma (scRNA-Seq and TCR-Seq) Description (local manifest) # GEO cellranger download (108421 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse186344/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse186344/GSE186344 # Field Value Dataset ID GSE186344 GSE / GSM accession GSE186344 Modality scRNA Species human Tissue bladder Cell count 2,228 PubMed PMID:35063085 Submission date Oct 21 2021 Source name (GEO) Human Brain Metastasis GEO title # Cellular Architecture of Human Brain Metastases Description (local manifest) # GEO cellranger download (2228 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse197177/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse197177/GSE197177 # Field Value Dataset ID GSE197177 GSE / GSM accession GSE197177 Modality scRNA Species human Tissue gut Cell count 21,560 PubMed PMID:37612267 Submission date Feb 22 2022 Source name (GEO) primary pancreatic tumors GEO title # A single-cell atlas of the tumor, stromal and immune microenvironments in pancreatic cancer liver metastasis Description (local manifest) # GEO cellranger download (21560 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse213337/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse213337/GSE213337 # Field Value Dataset ID GSE213337 GSE / GSM accession GSE213337 Modality scRNA Species mouse Tissue pancreas Cell count 8,631 PubMed PMID:36706988 Submission date Sep 14 2022 Source name (GEO) heart GEO title # Single cell analysis reveals the heterogeneity of fibroblasts in the diabetic heart Description (local manifest) # GEO cellranger download (8631 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse235063/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse235063/GSE235063 # Field Value Dataset ID GSE235063 GSE / GSM accession GSE235063 Modality scRNA Species human Tissue thymus Cell count 6,757 PubMed [PMID:37977148; 40991835](https://pubmed.ncbi.nlm.nih.gov/37977148; 40991835/) Submission date Jun 15 2023 Source name (GEO) Marrow GEO title # A longitudinal single-cell atlas of treatment response in pediatric AML (scRNA-Seq) Description (local manifest) # GEO cellranger download (6757 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse139555/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse139555/GSE139555 # Field Value Dataset ID GSE139555 GSE / GSM accession GSE139555 Modality scRNA Species human Tissue tcell Cell count 7,462 PubMed [PMID:32103181; 35263569](https://pubmed.ncbi.nlm.nih.gov/32103181; 35263569/) Submission date Oct 29 2019 Source name (GEO) CD3+ immune cells GEO title # Peripheral clonal expansion of T lymphocytes associates with tumour infiltration and response to cancer immunotherapy Description (local manifest) # GEO cellranger (7462 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse149655-2/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse149655-2/GSE149655-2 # Field Value Dataset ID GSE149655-2 GSE / GSM accession GSE149655 Modality scRNA Species human Tissue airway Cell count 4,397 PubMed PMID:32891189 Submission date Apr 30 2020 Source name (GEO) lung distal normal tissue from patient 01 GEO title # Single cell RNAseq of human early stage lung adenocarcinoma with activating somatic KRAS mutations and associated normal lung tissues reveals alterations of key gene expression in alveolar type II pneumocyteshttps://peterponyu.github.io/scCCVGBen/datasets/gse154778/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse154778/GSE154778 # Field Value Dataset ID GSE154778 GSE / GSM accession GSE154778 Modality scRNA Species human Tissue pancreas Cell count 585 PubMed PMID:32988401 Submission date Jul 20 2020 Source name (GEO) Pancreatic ductal adenocarcinoma GEO title # Single-cell transcriptomics analysis of pancreatic primary tumor and metastatic biopsy tissues Description (local manifest) # GEO cellranger (585 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse181388/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse181388/GSE181388 # Field Value Dataset ID GSE181388 GSE / GSM accession GSE181388 Modality scRNA Species human Tissue muscle Cell count 22,157 PubMed — Submission date Aug 03 2021 Source name (GEO) lung GEO title # scRNA-seq of human PCLS Description (local manifest) # GEO cellranger (22157 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse188676/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse188676/GSE188676 # Field Value Dataset ID GSE188676 GSE / GSM accession GSE188676 Modality scRNA Species mouse Tissue retina Cell count 22,360 PubMed — Submission date Nov 12 2021 Source name (GEO) Intestinal Organoids GEO title # Serine Palmitoyltransferase Controls Stemness of Intestinal Progenitors. Description (local manifest) # GEO cellranger (22360 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse125449/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse125449/GSE125449 # Field Value Dataset ID GSE125449 GSE / GSM accession GSE125449 Modality scRNA Species human Tissue liver Cell count 5,115 PubMed PMID:31588021 Submission date Jan 22 2019 Source name (GEO) Primary liver cancer single-cell GEO title # Tumor cell biodiversity drives microenvironmental reprogramming in liver cancer Description (local manifest) # GEO cellranger (5115 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse128033/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse128033/GSE128033 # Field Value Dataset ID GSE128033 GSE / GSM accession GSE128033 Modality scRNA Species human Tissue immune Cell count 737,280 PubMed [PMID:31221805; 37706427; 37566492](https://pubmed.ncbi.nlm.nih.gov/31221805; 37706427; 37566492/) Submission date Mar 07 2019 Source name (GEO) mix of upper + lower lobe lung_healthy donor GEO title # Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis Description (local manifest) # GEO cellranger (737280 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse138794/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse138794/GSE138794 # Field Value Dataset ID GSE138794 GSE / GSM accession GSE138794 Modality scRNA Species human Tissue brain Cell count 2,888 PubMed PMID:31554641 Submission date Oct 11 2019 Source name (GEO) Brain GEO title # A single cell atlas of human glioma Description (local manifest) # GEO cellranger (2888 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse159519/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse159519/GSE159519 # Field Value Dataset ID GSE159519 GSE / GSM accession GSE159519 Modality scRNA Species human Tissue lung Cell count 13,229 PubMed PMID:33147445 Submission date Oct 19 2020 Source name (GEO) ECCITE-seq cDNA: A549-ACE2 GEO title # Identification of required host factors for SARS-CoV-2 infection in human cells [ECCITE-seq] Description (local manifest) # GEO cellranger (13229 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse161277/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse161277/GSE161277 # Field Value Dataset ID GSE161277 GSE / GSM accession GSE161277 Modality scRNA Species human Tissue kidney Cell count 2,947 PubMed PMID:35221332 Submission date Nov 11 2020 Source name (GEO) Colorectal GEO title # Dissecting the Epithelial and Immune Evolution during Colorectal Carcinogenesis by Single-Cell RNA Sequencing Description (local manifest) # GEO cellranger (2947 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse173193/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse173193/GSE173193 # Field Value Dataset ID GSE173193 GSE / GSM accession GSE173193 Modality scRNA Species human Tissue adipose Cell count 7,829 PubMed [PMID:34025588; 36111571](https://pubmed.ncbi.nlm.nih.gov/34025588; 36111571/) Submission date Apr 23 2021 Source name (GEO) placenta GEO title # Single cell RNA-sequencing reveals placenta cellular heterogeneity in adverse pregnancy Description (local manifest) # GEO cellranger (7829 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse190604/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse190604/GSE190604 # Field Value Dataset ID GSE190604 GSE / GSM accession GSE190604 Modality scRNA Species human Tissue ovary Cell count 103,805 PubMed PMID:35113687 Submission date Dec 09 2021 Source name (GEO) Primary bulk T cells GEO title # CRISPR activation and interference screens decode stimulation responses in primary human T cells [CRISPRa Perturb-seq] Description (local manifest) # GEO cellranger (103805 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse120926/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse120926/GSE120926 # Field Value Dataset ID GSE120926 GSE / GSM accession GSE120926 Modality scRNA Species human Tissue tumor Cell count 102,525 PubMed PMID:32901110 Submission date Oct 08 2018 Source name (GEO) NPC cells GEO title # Single-cell RNA sequencing defines the interplay between tumor cells, virus and microenvironment in nasopharyngeal carcinoma Description (local manifest) # GEO cellranger (102525 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse189357-2/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse189357-2/GSE189357-2 # Field Value Dataset ID GSE189357-2 GSE / GSM accession GSE189357 Modality scRNA Species human Tissue colon Cell count 15,216 PubMed PMID:36434043 Submission date Nov 22 2021 Source name (GEO) Lung adenocarcinoma GEO title # Spatiotemporal transcriptional atlas of lung adenocarcinoma from adenocarcinoma in situ to invasive carcinoma [scRNA-seq] Description (local manifest) # GEO cellranger (15216 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse208074/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse208074/GSE208074 # Field Value Dataset ID GSE208074 GSE / GSM accession GSE208074 Modality scRNA Species human Tissue brain Cell count 8,048 PubMed — Submission date Jul 12 2022 Source name (GEO) peritumoral brain GEO title # Low-Intensity Pulsed Ultrasound Effects on the Human Blood Brain Barrier Description (local manifest) # GEO cellranger (8048 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse220297/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse220297/GSE220297 # Field Value Dataset ID GSE220297 GSE / GSM accession GSE220297 Modality scRNA Species pig Tissue blood Cell count 9,721 PubMed — Submission date Dec 07 2022 Source name (GEO) blood GEO title # Single-cell transcriptomic analysis reveals transcriptional and cell subpopulation differences between human and pig immune cells Description (local manifest) # GEO cellranger (9721 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse220840/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse220840/GSE220840 # Field Value Dataset ID GSE220840 GSE / GSM accession GSE220840 Modality scRNA Species human Tissue stem_cell Cell count 4,913 PubMed PMID:40220298 Submission date Dec 13 2022 Source name (GEO) Human induced pluripotent stem cell GEO title # Origin of extra-embryonic mesenchyme points to evolutionary novelty in primate early development [scRNA-seq] Description (local manifest) # GEO cellranger (4913 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse260778/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse260778/GSE260778 # Field Value Dataset ID GSE260778 GSE / GSM accession GSE260778 Modality scRNA Species human Tissue lung Cell count 3,842 PubMed PMID:39900892 Submission date Mar 04 2024 Source name (GEO) Lung GEO title # Fate mapping of human P63+ progenitor in vivo by single cell transcriptomic analysis [scRNA_seq] Description (local manifest) # GEO cellranger (3842 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse264586/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse264586/GSE264586 # Field Value Dataset ID GSE264586 GSE / GSM accession GSE264586 Modality scRNA Species human Tissue kidney Cell count 13,254 PubMed PMID:39794332 Submission date Apr 22 2024 Source name (GEO) Lymph node GEO title # Sitravatinib in combination with nivolumab plus ipilimumab in patients with advanced clear cell renal cell carcinoma: a phase 1 trial Description (local manifest) # GEO cellranger (13254 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse270891/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse270891/GSE270891 # Field Value Dataset ID GSE270891 GSE / GSM accession GSE270891 Modality scRNA Species human Tissue stem_cell Cell count 8,920 PubMed PMID:39630039 Submission date Jun 26 2024 Source name (GEO) iPSC GEO title # BRAFV600E induces key features of LCH in iPSCs with cell type–specific phenotypes and drug responses Description (local manifest) # GEO cellranger (8920 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse273423/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse273423/GSE273423 # Field Value Dataset ID GSE273423 GSE / GSM accession GSE273423 Modality scRNA Species human Tissue blood Cell count 7,226 PubMed PMID:39288262 Submission date Jul 30 2024 Source name (GEO) Blood GEO title # NKG2C and NKG2A coexpression defines a highly functional antiviral NK population in spontaneous HIV control Description (local manifest) # GEO cellranger (7226 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse274905/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse274905/GSE274905 # Field Value Dataset ID GSE274905 GSE / GSM accession GSE274905 Modality scRNA Species human Tissue unknown Cell count 30,634 PubMed PMID:39482470 Submission date Aug 15 2024 Source name (GEO) JHOS2 (CVCL_4647) GEO title # A multiplex single-cell RNA-seq pharmacotranscriptomics pipeline for drug discovery Description (local manifest) # GEO cellranger (30634 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse279264/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse279264/GSE279264 # Field Value Dataset ID GSE279264 GSE / GSM accession GSE279264 Modality scRNA Species human Tissue stem_cell Cell count 12,071 PubMed — Submission date Oct 11 2024 Source name (GEO) hiPS cell-deerived regionalized organoids GEO title # Generation of human induced pluripotent stem cell-derived 3D human cortical, striatal, mesencephalic and diencephalic organoids Description (local manifest) # GEO cellranger (12071 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse280258/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse280258/GSE280258 # Field Value Dataset ID GSE280258 GSE / GSM accession GSE280258 Modality scRNA Species human Tissue blood Cell count 11,104 PubMed PMID:40073863 Submission date Oct 24 2024 Source name (GEO) PBMC GEO title # Distinct features of a peripheral T-helper subset that drives the B-cell response in dengue virus infection Description (local manifest) # GEO cellranger (11104 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse280767/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse280767/GSE280767 # Field Value Dataset ID GSE280767 GSE / GSM accession GSE280767 Modality scRNA Species human Tissue blood Cell count 11,645 PubMed PMID:39529170 Submission date Oct 31 2024 Source name (GEO) PBMC GEO title # Adenine base editors induce off-target structure variations in mouse embryos and primary human T cells Description (local manifest) # GEO cellranger (11645 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse283554/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse283554/GSE283554 # Field Value Dataset ID GSE283554 GSE / GSM accession GSE283554 Modality scRNA Species human Tissue blood Cell count 6,119 PubMed PMID:40389438 Submission date Dec 05 2024 Source name (GEO) PBMC GEO title # A CRISPR/Cas9-based enhancement of high-throughput single-cell transcriptomics Description (local manifest) # GEO cellranger (6119 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse193807/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse193807/GSE193807 # Field Value Dataset ID GSE193807 GSE / GSM accession GSE193807 Modality scRNA Species human Tissue skin Cell count 8,647 PubMed PMID:39346541 Submission date Jan 17 2022 Source name (GEO) skin GEO title # Single cell RNA-Seq analysis of irradiated and non-irradiated skin cells in a nuclear accident patient. Description (local manifest) # GEO cellranger (8647 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse216673/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse216673/GSE216673 # Field Value Dataset ID GSE216673 GSE / GSM accession GSE216673 Modality scRNA Species human Tissue brain Cell count 13,867 PubMed PMID:38129659 Submission date Oct 27 2022 Source name (GEO) embryonic stem cell GEO title # TREX1 is required for microglial cholesterol homeostasis and subsequent oligodendrocyte maturation during brain development [scRNA-seq] Description (local manifest) # GEO cellranger (13867 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse232938/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse232938/GSE232938 # Field Value Dataset ID GSE232938 GSE / GSM accession GSE232938 Modality scRNA Species human Tissue stem_cell Cell count 13,070 PubMed PMID:39413784 Submission date May 19 2023 Source name (GEO) H9 GEO title # LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [scRNA-seq] Description (local manifest) # GEO cellranger (13070 cells) Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse253936/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse253936/GSE253936 # Field Value Dataset ID GSE253936 GSE / GSM accession GSE253936 Modality scRNA Species human Tissue blood Cell count 3,267 PubMed PMID:39302624 Submission date Jan 22 2024 Source name (GEO) cord blood-derived CD34+ cells GEO title # Expansion effect of romiplostim on hematopoietic stem and progenitor cells versus other thrombopoietin receptor agonists Description (local manifest) # GEO cellranger (3267 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gse272457/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse272457/GSE272457 # Field Value Dataset ID GSE272457 GSE / GSM accession GSE272457 Modality scRNA Species human Tissue unknown Cell count 8,265 PubMed [PMID:39282389; 39914388](https://pubmed.ncbi.nlm.nih.gov/39282389; 39914388/) Submission date Jul 17 2024 Source name (GEO) HEK293T/17 GEO title # Characterization and bioinformatic filtering of ambient gRNAs in single-cell CRISPR screens using CLEANSER [scRNA-seq] Description (local manifest) # GEO cellranger (8265 cells) Record assembled from the curated benchmark manifest and public GEO metadata.https://peterponyu.github.io/scCCVGBen/datasets/gsm8685152/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8685152/GSM8685152 # Field Value Dataset ID GSM8685152 GSE / GSM accession GSM8685152 Modality scATAC Species mouse Tissue other Cell count 27,166 PubMed — Submission date Dec 17 2024 Source name (GEO) Hypothalamus and Prethalamus GEO title # E11.5 Wild Type scRNA-Seq Description (local manifest) # E11.5 Wild Type scRNA-Seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8685177/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8685177/GSM8685177 # Field Value Dataset ID GSM8685177 GSE / GSM accession GSM8685177 Modality scATAC Species mouse Tissue other Cell count 22,409 PubMed — Submission date Dec 17 2024 Source name (GEO) Hypothalamus and Prethalamus GEO title # P8 Foxd1-Cre/+ ; Dlx1/2-flox/flox scRNA-Seq Replicate 1 Description (local manifest) # P8 Foxd1-Cre/+ ; Dlx1/2-flox/flox scRNA-Seq Replicate 1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8900551/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8900551/GSM8900551 # Field Value Dataset ID GSM8900551 GSE / GSM accession GSM8900551 Modality scATAC Species mouse Tissue lung Cell count 20,020 PubMed — Submission date Apr 10 2025 Source name (GEO) lung GEO title # Multiome, murine lung tissue, ATAC4 Description (local manifest) # Multiome, murine lung tissue, ATAC4 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8900548/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8900548/GSM8900548 # Field Value Dataset ID GSM8900548 GSE / GSM accession GSM8900548 Modality scATAC Species mouse Tissue lung Cell count 20,005 PubMed — Submission date Apr 10 2025 Source name (GEO) lung GEO title # Multiome, murine lung tissue, ATAC1 Description (local manifest) # Multiome, murine lung tissue, ATAC1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8397466/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8397466/GSM8397466 # Field Value Dataset ID GSM8397466 GSE / GSM accession GSM8397466 Modality scATAC Species mouse Tissue bone_marrow Cell count 18,157 PubMed — Submission date Jul 15 2024 Source name (GEO) Bone marrow GEO title # Bone marrow, WT, female, biol rep 1, scATACseq Description (local manifest) # Bone marrow, WT, female, biol rep 1, scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8900549/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8900549/GSM8900549 # Field Value Dataset ID GSM8900549 GSE / GSM accession GSM8900549 Modality scATAC Species mouse Tissue lung Cell count 16,778 PubMed — Submission date Apr 10 2025 Source name (GEO) lung GEO title # Multiome, murine lung tissue, ATAC2 Description (local manifest) # Multiome, murine lung tissue, ATAC2 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8685155/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8685155/GSM8685155 # Field Value Dataset ID GSM8685155 GSE / GSM accession GSM8685155 Modality scATAC Species mouse Tissue other Cell count 16,236 PubMed — Submission date Dec 17 2024 Source name (GEO) Hypothalamus and Prethalamus GEO title # E13.5 Wild Type scRNA-Seq Replicate 1 Description (local manifest) # E13.5 Wild Type scRNA-Seq Replicate 1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8852349/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8852349/GSM8852349 # Field Value Dataset ID GSM8852349 GSE / GSM accession GSM8852349 Modality scATAC Species human Tissue tumor Cell count 16,176 PubMed — Submission date Mar 17 2025 Source name (GEO) tumor tissue GEO title # scATAC-seq of MH_13-084-D13 Description (local manifest) # scATAC-seq of MH_13-084-D13 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734291/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734291/GSM7734291 # Field Value Dataset ID GSM7734291 GSE / GSM accession GSM7734291 Modality scATAC Species mouse Tissue blood Cell count 15,709 PubMed — Submission date Aug 24 2023 Source name (GEO) Lymphocytes GEO title # D2 CD8T, scATAC-seq Description (local manifest) # D2 CD8T, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8900550/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8900550/GSM8900550 # Field Value Dataset ID GSM8900550 GSE / GSM accession GSM8900550 Modality scATAC Species mouse Tissue lung Cell count 15,701 PubMed — Submission date Apr 10 2025 Source name (GEO) lung GEO title # Multiome, murine lung tissue, ATAC3 Description (local manifest) # Multiome, murine lung tissue, ATAC3 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8900553/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8900553/GSM8900553 # Field Value Dataset ID GSM8900553 GSE / GSM accession GSM8900553 Modality scATAC Species mouse Tissue lung Cell count 14,346 PubMed — Submission date Apr 10 2025 Source name (GEO) lung GEO title # Multiome, murine lung tissue, ATAC6 Description (local manifest) # Multiome, murine lung tissue, ATAC6 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734292/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734292/GSM7734292 # Field Value Dataset ID GSM7734292 GSE / GSM accession GSM7734292 Modality scATAC Species mouse Tissue blood Cell count 13,313 PubMed — Submission date Aug 24 2023 Source name (GEO) Lymphocytes GEO title # D8 CD8T, scATAC-seq Description (local manifest) # D8 CD8T, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734290/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734290/GSM7734290 # Field Value Dataset ID GSM7734290 GSE / GSM accession GSM7734290 Modality scATAC Species mouse Tissue blood Cell count 12,883 PubMed — Submission date Aug 24 2023 Source name (GEO) Lymphocytes GEO title # Naïve CD8T, scATAC-seq Description (local manifest) # Naïve CD8T, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7308367/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7308367/GSM7308367 # Field Value Dataset ID GSM7308367 GSE / GSM accession GSM7308367 Modality scATAC Species human Tissue blood Cell count 12,773 PubMed — Submission date May 08 2023 Source name (GEO) PBMC GEO title # Healthy Donor, rep1 Description (local manifest) # Healthy Donor, rep1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8546125/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8546125/GSM8546125 # Field Value Dataset ID GSM8546125 GSE / GSM accession GSM8546125 Modality scATAC Species mouse Tissue lung Cell count 10,772 PubMed — Submission date Sep 30 2024 Source name (GEO) Epcam-CD31-CD45 GEO title # bleomycin, lung mesenchymal, adult, ATAC-seq Description (local manifest) # bleomycin, lung mesenchymal, adult, ATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7064215/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7064215/GSM7064215 # Field Value Dataset ID GSM7064215 GSE / GSM accession GSM7064215 Modality scATAC Species human Tissue retina Cell count 10,545 PubMed — Submission date Feb 24 2023 Source name (GEO) macula lutea GEO title # 19_D005_atac_lib Description (local manifest) # 19_D005_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884541/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884541/GSM7884541 # Field Value Dataset ID GSM7884541 GSE / GSM accession GSM7884541 Modality scATAC Species human Tissue blood Cell count 9,868 PubMed — Submission date Nov 07 2023 Source name (GEO) peripheral region of retina GEO title # 10xATAC_D027_13_hu_Lobe_atac_lib Description (local manifest) # 10xATAC_D027_13_hu_Lobe_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8852348/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8852348/GSM8852348 # Field Value Dataset ID GSM8852348 GSE / GSM accession GSM8852348 Modality scATAC Species human Tissue tumor Cell count 9,865 PubMed — Submission date Mar 17 2025 Source name (GEO) tumor tissue GEO title # scATAC-seq of MH_13-084-D12 Description (local manifest) # scATAC-seq of MH_13-084-D12 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884543/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884543/GSM7884543 # Field Value Dataset ID GSM7884543 GSE / GSM accession GSM7884543 Modality scATAC Species human Tissue retina Cell count 9,640 PubMed — Submission date Nov 07 2023 Source name (GEO) macula lutea GEO title # 10xATAC_D030_13_atac_lib Description (local manifest) # 10xATAC_D030_13_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8546124/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8546124/GSM8546124 # Field Value Dataset ID GSM8546124 GSE / GSM accession GSM8546124 Modality scATAC Species mouse Tissue lung Cell count 9,531 PubMed — Submission date Sep 30 2024 Source name (GEO) Epcam-CD31-CD45 GEO title # control, lung mesenchymal, adult, ATAC-seq Description (local manifest) # control, lung mesenchymal, adult, ATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5402770/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5402770/GSM5402770 # Field Value Dataset ID GSM5402770 GSE / GSM accession GSM5402770 Modality scATAC Species mouse Tissue blood Cell count 9,495 PubMed — Submission date Jun 27 2021 Source name (GEO) Peripheral nerve tumor GEO title # P115Lats1mutparaspinal Description (local manifest) # P115Lats1mutparaspinal Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8997246/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8997246/GSM8997246 # Field Value Dataset ID GSM8997246 GSE / GSM accession GSM8997246 Modality scATAC Species human Tissue blood Cell count 9,346 PubMed — Submission date May 20 2025 Source name (GEO) Blood GEO title # Donor 1 scATAC-seq Description (local manifest) # Donor 1 scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7308369/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7308369/GSM7308369 # Field Value Dataset ID GSM7308369 GSE / GSM accession GSM7308369 Modality scATAC Species human Tissue blood Cell count 9,302 PubMed — Submission date May 08 2023 Source name (GEO) PBMC GEO title # Pre-transplant, no_future_aGVHD, rep1 Description (local manifest) # Pre-transplant, no_future_aGVHD, rep1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884549/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884549/GSM7884549 # Field Value Dataset ID GSM7884549 GSE / GSM accession GSM7884549 Modality scATAC Species human Tissue blood Cell count 9,041 PubMed — Submission date Nov 07 2023 Source name (GEO) peripheral region of retina GEO title # 10xATAC_D9_13_hu_Lobe_atac_lib Description (local manifest) # 10xATAC_D9_13_hu_Lobe_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7064216/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7064216/GSM7064216 # Field Value Dataset ID GSM7064216 GSE / GSM accession GSM7064216 Modality scATAC Species human Tissue retina Cell count 8,905 PubMed — Submission date Feb 24 2023 Source name (GEO) macula lutea GEO title # 19_D006_atac_lib Description (local manifest) # 19_D006_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8462143/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8462143/GSM8462143 # Field Value Dataset ID GSM8462143 GSE / GSM accession GSM8462143 Modality scATAC Species human Tissue lung Cell count 8,872 PubMed — Submission date Aug 15 2024 Source name (GEO) Lung GEO title # AL05, scATAC-seq Description (local manifest) # AL05, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8462145/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8462145/GSM8462145 # Field Value Dataset ID GSM8462145 GSE / GSM accession GSM8462145 Modality scATAC Species human Tissue lung Cell count 8,389 PubMed — Submission date Aug 15 2024 Source name (GEO) Lung GEO title # AL10, scATAC-seq Description (local manifest) # AL10, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6214535/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6214535/GSM6214535 # Field Value Dataset ID GSM6214535 GSE / GSM accession GSM6214535 Modality scATAC Species mouse Tissue gut Cell count 8,253 PubMed — Submission date Jun 06 2022 Source name (GEO) Colon IEL GEO title # SI_IEL P14 CD8+ T cells Description (local manifest) # SI_IEL P14 CD8+ T cells Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6052781/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6052781/GSM6052781 # Field Value Dataset ID GSM6052781 GSE / GSM accession GSM6052781 Modality scATAC Species mouse Tissue skin Cell count 8,016 PubMed — Submission date Apr 21 2022 Source name (GEO) skin GEO title # scATAC_seq_E13.5 Description (local manifest) # GSM6052781_E13 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6638254/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6638254/GSM6638254 # Field Value Dataset ID GSM6638254 GSE / GSM accession GSM6638254 Modality scATAC Species human Tissue other Cell count 7,990 PubMed — Submission date Oct 14 2022 Source name (GEO) MG63.3-GFP GEO title # 633, invitro Description (local manifest) # 633, invitro Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8729707/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8729707/GSM8729707 # Field Value Dataset ID GSM8729707 GSE / GSM accession GSM8729707 Modality scATAC Species human Tissue other Cell count 7,934 PubMed — Submission date Jan 13 2025 Source name (GEO) aortic media GEO title # Human aortic media Description (local manifest) # Human aortic media Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6052783/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6052783/GSM6052783 # Field Value Dataset ID GSM6052783 GSE / GSM accession GSM6052783 Modality scATAC Species mouse Tissue skin Cell count 7,896 PubMed — Submission date Apr 21 2022 Source name (GEO) skin GEO title # scATAC_seq_P0 Description (local manifest) # scATAC_seq_P0 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6052782/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6052782/GSM6052782 # Field Value Dataset ID GSM6052782 GSE / GSM accession GSM6052782 Modality scATAC Species mouse Tissue skin Cell count 7,714 PubMed — Submission date Apr 21 2022 Source name (GEO) skin GEO title # scATAC_seq_E16.5 Description (local manifest) # GSM6052782_E16 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884545/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884545/GSM7884545 # Field Value Dataset ID GSM7884545 GSE / GSM accession GSM7884545 Modality scATAC Species human Tissue blood Cell count 7,682 PubMed — Submission date Nov 07 2023 Source name (GEO) peripheral region of retina GEO title # 10xATAC_D021_13_hu_Lobe_atac_lib Description (local manifest) # 10xATAC_D021_13_hu_Lobe_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7064217/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7064217/GSM7064217 # Field Value Dataset ID GSM7064217 GSE / GSM accession GSM7064217 Modality scATAC Species human Tissue retina Cell count 7,102 PubMed — Submission date Feb 24 2023 Source name (GEO) macula lutea GEO title # 19_D007_atac_lib Description (local manifest) # 19_D007_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734712/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734712/GSM7734712 # Field Value Dataset ID GSM7734712 GSE / GSM accession GSM7734712 Modality scATAC Species human Tissue other Cell count 7,028 PubMed — Submission date Aug 27 2023 Source name (GEO) primary tissue GEO title # MGH230_scATAC Description (local manifest) # MGH230_scATAC Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7777063/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7777063/GSM7777063 # Field Value Dataset ID GSM7777063 GSE / GSM accession GSM7777063 Modality scATAC Species human Tissue blood Cell count 6,819 PubMed — Submission date Sep 12 2023 Source name (GEO) umbilical cord blood GEO title # scATACseq_CD34+_AOAtreatment_24h_multipledonors Description (local manifest) # scATACseq_CD34+_AOAtreatment_24h_multipledonors Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7056609/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7056609/GSM7056609 # Field Value Dataset ID GSM7056609 GSE / GSM accession GSM7056609 Modality scATAC Species mouse Tissue other Cell count 6,654 PubMed — Submission date Feb 22 2023 Source name (GEO) Ankle Joint Synovium GEO title # C57Bl/6 Murine Synovial CD45+CD11b+Ly6g-SiglecF-Cd64-MHCII- cells, ATAC Description (local manifest) # C57Bl/6 Murine Synovial CD45+CD11b+Ly6g-SiglecF-Cd64-MHCII- cells, ATAC Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6044075/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6044075/GSM6044075 # Field Value Dataset ID GSM6044075 GSE / GSM accession GSM6044075 Modality scATAC Species human Tissue liver Cell count 6,617 PubMed — Submission date Apr 14 2022 Source name (GEO) colorectal cancer cells GEO title # CRC_liver_metastasis_1 Description (local manifest) # CRC_liver_metastasis_1 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7777062/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7777062/GSM7777062 # Field Value Dataset ID GSM7777062 GSE / GSM accession GSM7777062 Modality scATAC Species human Tissue blood Cell count 6,433 PubMed — Submission date Sep 12 2023 Source name (GEO) umbilical cord blood GEO title # scATACseq_CD34+_DONtreatment_24h_multipledonors Description (local manifest) # scATACseq_CD34+_DONtreatment_24h_multipledonors Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884550/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884550/GSM7884550 # Field Value Dataset ID GSM7884550 GSE / GSM accession GSM7884550 Modality scATAC Species human Tissue blood Cell count 6,390 PubMed — Submission date Nov 07 2023 Source name (GEO) peripheral region of retina GEO title # 10xATAC_D5_13_hu_Lobe_atac_lib Description (local manifest) # 10xATAC_D5_13_hu_Lobe_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734715/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734715/GSM7734715 # Field Value Dataset ID GSM7734715 GSE / GSM accession GSM7734715 Modality scATAC Species human Tissue other Cell count 6,357 PubMed — Submission date Aug 27 2023 Source name (GEO) primary tissue GEO title # MGH234_scATAC Description (local manifest) # MGH234_scATAC Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7884540/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7884540/GSM7884540 # Field Value Dataset ID GSM7884540 GSE / GSM accession GSM7884540 Modality scATAC Species human Tissue blood Cell count 5,876 PubMed — Submission date Nov 07 2023 Source name (GEO) peripheral region of retina GEO title # 10xATAC_D013_13_hu_Lobe_atac_lib Description (local manifest) # 10xATAC_D013_13_hu_Lobe_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7777060/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7777060/GSM7777060 # Field Value Dataset ID GSM7777060 GSE / GSM accession GSM7777060 Modality scATAC Species human Tissue blood Cell count 5,814 PubMed — Submission date Sep 12 2023 Source name (GEO) umbilical cord blood GEO title # scATACseq_CD34+_Notreatment_24h_multipledonors Description (local manifest) # scATACseq_CD34+_Notreatment_24h_multipledonors Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7062447/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7062447/GSM7062447 # Field Value Dataset ID GSM7062447 GSE / GSM accession GSM7062447 Modality scATAC Species mouse Tissue blood Cell count 5,764 PubMed — Submission date Feb 24 2023 Source name (GEO) Lymphocytes GEO title # D2 CD8T scATAC-seq Description (local manifest) # D2 CD8T scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7734716/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7734716/GSM7734716 # Field Value Dataset ID GSM7734716 GSE / GSM accession GSM7734716 Modality scATAC Species human Tissue other Cell count 5,754 PubMed — Submission date Aug 27 2023 Source name (GEO) primary tissue GEO title # MGH236_scATAC Description (local manifest) # MGH236_scATAC Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5769461/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5769461/GSM5769461 # Field Value Dataset ID GSM5769461 GSE / GSM accession GSM5769461 Modality scATAC Species zebrafish Tissue other Cell count 5,409 PubMed — Submission date Jan 03 2022 Source name (GEO) Regenerating adult zebrafish utricle GEO title # Day5_DTR_Utricle_scATACseq Description (local manifest) # Day5_DTR_Utricle_scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6044077/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6044077/GSM6044077 # Field Value Dataset ID GSM6044077 GSE / GSM accession GSM6044077 Modality scATAC Species human Tissue liver Cell count 5,280 PubMed — Submission date Apr 14 2022 Source name (GEO) colorectal cancer cells GEO title # CRC_liver_metastasis_3 Description (local manifest) # CRC_liver_metastasis_3 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5769453/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5769453/GSM5769453 # Field Value Dataset ID GSM5769453 GSE / GSM accession GSM5769453 Modality scATAC Species zebrafish Tissue other Cell count 5,264 PubMed — Submission date Jan 03 2022 Source name (GEO) Untreated wild-type saccule GEO title # Untreated_WT_Saccule_scATACseq Description (local manifest) # Untreated_WT_Saccule_scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7062446/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7062446/GSM7062446 # Field Value Dataset ID GSM7062446 GSE / GSM accession GSM7062446 Modality scATAC Species mouse Tissue blood Cell count 5,171 PubMed — Submission date Feb 24 2023 Source name (GEO) Lymphocytes GEO title # Naïve CD8T scATAC-seq Description (local manifest) # Naïve CD8T scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8462147/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8462147/GSM8462147 # Field Value Dataset ID GSM8462147 GSE / GSM accession GSM8462147 Modality scATAC Species human Tissue lung Cell count 5,048 PubMed — Submission date Aug 15 2024 Source name (GEO) Lung GEO title # AL12, scATAC-seq Description (local manifest) # AL12, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse198730/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse198730/GSE198730 # Field Value Dataset ID GSE198730 GSE / GSM accession GSE198730 Modality scATAC Species mouse Tissue stem_cell Cell count 5,010 PubMed PMID:35977485 Submission date Mar 15 2022 Source name (GEO) Naïve ESC GEO title # Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution Description (local manifest) # Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolutionhttps://peterponyu.github.io/scCCVGBen/datasets/gse198730-2/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse198730-2/GSE198730-2 # Field Value Dataset ID GSE198730-2 GSE / GSM accession GSE198730 Modality scATAC Species mouse Tissue stem_cell Cell count 5,000 PubMed PMID:35977485 Submission date Mar 15 2022 Source name (GEO) Naïve ESC GEO title # Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution Description (local manifest) # Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolutionhttps://peterponyu.github.io/scCCVGBen/datasets/gsm5766892/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5766892/GSM5766892 # Field Value Dataset ID GSM5766892 GSE / GSM accession GSM5766892 Modality scATAC Species human Tissue stem_cell Cell count 4,901 PubMed — Submission date Dec 31 2021 Source name (GEO) HS360, day 0, hESCs undifferentiated GEO title # HS360-Day0-rep1 [scATAC-seq] Description (local manifest) # HS360-Day0-rep1 [scATAC-seq] Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5402771/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5402771/GSM5402771 # Field Value Dataset ID GSM5402771 GSE / GSM accession GSM5402771 Modality scATAC Species human Tissue blood Cell count 4,745 PubMed — Submission date Jun 27 2021 Source name (GEO) Peripheral nerve tumor GEO title # NF_2-004 Description (local manifest) # NF_2-004 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8517035/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8517035/GSM8517035 # Field Value Dataset ID GSM8517035 GSE / GSM accession GSM8517035 Modality scATAC Species mouse Tissue brain Cell count 4,425 PubMed — Submission date Sep 15 2024 Source name (GEO) Cortex - ALM GEO title # Replicate 1 for P28 cortex ALM interneuron Description (local manifest) # Replicate 1 for P28 cortex ALM interneuron Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7062449/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7062449/GSM7062449 # Field Value Dataset ID GSM7062449 GSE / GSM accession GSM7062449 Modality scATAC Species mouse Tissue blood Cell count 4,379 PubMed — Submission date Feb 24 2023 Source name (GEO) Lymphocytes GEO title # D8-2 CD8T scATAC-seq Description (local manifest) # D8-2 CD8T scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5769456/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5769456/GSM5769456 # Field Value Dataset ID GSM5769456 GSE / GSM accession GSM5769456 Modality scATAC Species zebrafish Tissue other Cell count 4,320 PubMed — Submission date Jan 03 2022 Source name (GEO) Untreated DTR saccule GEO title # Untreated_DTR_Saccule_scATACseq Description (local manifest) # Untreated_DTR_Saccule_scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8397467/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8397467/GSM8397467 # Field Value Dataset ID GSM8397467 GSE / GSM accession GSM8397467 Modality scATAC Species mouse Tissue bone_marrow Cell count 4,207 PubMed — Submission date Jul 15 2024 Source name (GEO) Bone marrow GEO title # Bone marrow, WT, female, biol rep 2, scATACseq Description (local manifest) # Bone marrow, WT, female, biol rep 2, scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8462144/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8462144/GSM8462144 # Field Value Dataset ID GSM8462144 GSE / GSM accession GSM8462144 Modality scATAC Species human Tissue lung Cell count 4,116 PubMed — Submission date Aug 15 2024 Source name (GEO) Lung GEO title # AL08, scATAC-seq Description (local manifest) # AL08, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7064214/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7064214/GSM7064214 # Field Value Dataset ID GSM7064214 GSE / GSM accession GSM7064214 Modality scATAC Species human Tissue retina Cell count 4,112 PubMed — Submission date Feb 24 2023 Source name (GEO) macula lutea GEO title # 19_D003_atac_lib Description (local manifest) # 19_D003_atac_lib Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7777061/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7777061/GSM7777061 # Field Value Dataset ID GSM7777061 GSE / GSM accession GSM7777061 Modality scATAC Species human Tissue blood Cell count 4,074 PubMed — Submission date Sep 12 2023 Source name (GEO) umbilical cord blood GEO title # scATACseq_CD34+_2DGtreatment_24h_multipledonors Description (local manifest) # scATACseq_CD34+_2DGtreatment_24h_multipledonors Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5975166/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5975166/GSM5975166 # Field Value Dataset ID GSM5975166 GSE / GSM accession GSM5975166 Modality scATAC Species mouse Tissue other Cell count 4,007 PubMed — Submission date Mar 28 2022 Source name (GEO) P14 CD8 T cells from LCMV Armstrong infection 200 days post infection GEO title # Arm_d200 Description (local manifest) # Arm_d200 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5975165/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5975165/GSM5975165 # Field Value Dataset ID GSM5975165 GSE / GSM accession GSM5975165 Modality scATAC Species mouse Tissue other Cell count 3,805 PubMed — Submission date Mar 28 2022 Source name (GEO) P14 CD8 T cells from LCMV Armstrong infection 60 days post infection GEO title # Arm_d60 Description (local manifest) # Arm_d60 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6783752/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6783752/GSM6783752 # Field Value Dataset ID GSM6783752 GSE / GSM accession GSM6783752 Modality scATAC Species human Tissue other Cell count 3,722 PubMed — Submission date Dec 03 2022 Source name (GEO) HS360, day 20, past stage III maturation, exposed to 200 μM paracetamol GEO title # HS360-Day20-P200 [scATAC-seq] Description (local manifest) # HS360-Day20-P200 [scATAC-seq] Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm7062450/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm7062450/GSM7062450 # Field Value Dataset ID GSM7062450 GSE / GSM accession GSM7062450 Modality scATAC Species mouse Tissue blood Cell count 3,693 PubMed — Submission date Feb 24 2023 Source name (GEO) Lymphocytes GEO title # D180 CD8T scATAC-seq Description (local manifest) # D180 CD8T scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6449881/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6449881/GSM6449881 # Field Value Dataset ID GSM6449881 GSE / GSM accession GSM6449881 Modality scATAC Species human Tissue blood Cell count 3,473 PubMed — Submission date Aug 11 2022 Source name (GEO) PBMC GEO title # HD 4, PBMC, CD4+ CD25+ T, scATAC-seq Description (local manifest) # HD 4, PBMC, CD4+ CD25+ T, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5124061/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5124061/GSM5124061 # Field Value Dataset ID GSM5124061 GSE / GSM accession GSM5124061 Modality scATAC Species human Tissue pdx Cell count 3,350 PubMed — Submission date Mar 02 2021 Source name (GEO) breast cancer GEO title # scATAC_vehicle Description (local manifest) # GSM5124061_PDX_390_vehicle_peak_bc_matrix Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6044076/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6044076/GSM6044076 # Field Value Dataset ID GSM6044076 GSE / GSM accession GSM6044076 Modality scATAC Species human Tissue liver Cell count 3,329 PubMed — Submission date Apr 14 2022 Source name (GEO) colorectal cancer cells GEO title # CRC_liver_metastasis_2 Description (local manifest) # CRC_liver_metastasis_2 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6449880/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6449880/GSM6449880 # Field Value Dataset ID GSM6449880 GSE / GSM accession GSM6449880 Modality scATAC Species human Tissue pbmc Cell count 3,303 PubMed — Submission date Aug 11 2022 Source name (GEO) PBMC GEO title # HD 4, PBMC, eTreg, scATAC-seq Description (local manifest) # HD 4, PBMC, eTreg, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6044073/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6044073/GSM6044073 # Field Value Dataset ID GSM6044073 GSE / GSM accession GSM6044073 Modality scATAC Species human Tissue tumor Cell count 3,268 PubMed — Submission date Apr 14 2022 Source name (GEO) colorectal cancer cells GEO title # CRC_primary_2 Description (local manifest) # CRC_primary_2 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5769462/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5769462/GSM5769462 # Field Value Dataset ID GSM5769462 GSE / GSM accession GSM5769462 Modality scATAC Species zebrafish Tissue other Cell count 3,267 PubMed — Submission date Jan 03 2022 Source name (GEO) Regenerating adult zebrafish saccule GEO title # Day7_DTR_Saccule_scATACseq Description (local manifest) # Day7_DTR_Saccule_scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm5769463/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm5769463/GSM5769463 # Field Value Dataset ID GSM5769463 GSE / GSM accession GSM5769463 Modality scATAC Species zebrafish Tissue other Cell count 3,187 PubMed — Submission date Jan 03 2022 Source name (GEO) Regenerating adult zebrafish utricle GEO title # Day7_DTR_Utricle_scATACseq Description (local manifest) # Day7_DTR_Utricle_scATACseq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6449878/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6449878/GSM6449878 # Field Value Dataset ID GSM6449878 GSE / GSM accession GSM6449878 Modality scATAC Species human Tissue other Cell count 3,179 PubMed — Submission date Aug 11 2022 Source name (GEO) TIL GEO title # NSCLC 8, TIL, eTreg, scATAC-seq Description (local manifest) # NSCLC 8, TIL, eTreg, scATAC-seq Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm8852347/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm8852347/GSM8852347 # Field Value Dataset ID GSM8852347 GSE / GSM accession GSM8852347 Modality scATAC Species human Tissue tumor Cell count 3,147 PubMed — Submission date Mar 17 2025 Source name (GEO) tumor tissue GEO title # scATAC-seq of MH_07-042-M2 Description (local manifest) # scATAC-seq of MH_07-042-M2 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gsm6783751/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gsm6783751/GSM6783751 # Field Value Dataset ID GSM6783751 GSE / GSM accession GSM6783751 Modality scATAC Species human Tissue other Cell count 3,084 PubMed — Submission date Dec 03 2022 Source name (GEO) HS360, day 20, past stage III maturation, exposed to 100 μM paracetamol GEO title # HS360-Day20-P100 [scATAC-seq] Description (local manifest) # HS360-Day20-P100 [scATAC-seq] Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-001/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-001/restricted-scatac-001 # Field Value Dataset ID restricted-scatac-001 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 3,134 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-002/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-002/restricted-scatac-002 # Field Value Dataset ID restricted-scatac-002 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 4,196 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-003/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-003/restricted-scatac-003 # Field Value Dataset ID restricted-scatac-003 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 6,718 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-004/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-004/restricted-scatac-004 # Field Value Dataset ID restricted-scatac-004 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 4,802 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-005/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-005/restricted-scatac-005 # Field Value Dataset ID restricted-scatac-005 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 3,020 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-006/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/restricted-scatac-006/restricted-scatac-006 # Field Value Dataset ID restricted-scatac-006 GSE / GSM accession restricted Modality scATAC Species human Tissue blood Cell count 3,361 PubMed — Submission date — Source name (GEO) blood GEO title # Restricted-access scATAC immune-response benchmark record Description (local manifest) # Restricted-access benchmark record retained for cohort-level reproducibility without disclosing nonpublic accession details. Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse213469/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse213469/GSE213469 # Field Value Dataset ID GSE213469 GSE / GSM accession GSE213469 Modality scATAC Species mouse Tissue unknown Cell count 0 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # GSE213469 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.https://peterponyu.github.io/scCCVGBen/datasets/gse216175/Mon, 01 Jan 0001 00:00:00 +0000https://peterponyu.github.io/scCCVGBen/datasets/gse216175/GSE216175 # Field Value Dataset ID GSE216175 GSE / GSM accession GSE216175 Modality scATAC Species human Tissue unknown Cell count 0 PubMed — Submission date — Source name (GEO) — GEO title # (no online title) Description (local manifest) # GSE216175 Record assembled from the curated benchmark manifest and public GEO metadata. Internal identifiers and local paths are intentionally omitted from this public resource.