Cell-count distribution
Positive-count range 585–737,280 cells; 18 entries report counts as unavailable.
<1k
2
1–3k
9
3–10k
95
10–30k
50
30–100k
16
100–300k
8
300k–1M
2
>1M
0
Supplementary Figure S1 source route
Next.js online benchmark resource
This route is a browser-rendered companion layout for publication screenshots. It reuses the same sanitized JSON payload as the exported site and presents a compact six-panel online-resource summary.
A
Landing summary
200
Records
balanced scRNA/scATAC
32
Methods
encoders + graph + baselines
20
Metrics
publication-display scores
6
Redacted
restricted public rows
Publication-safe contract
The figure, static export and supplementary table are generated from the same sanitized manifest: public accessions remain linkable, while restricted rows keep cohort-level reproducibility without disclosing nonpublic accession or file tokens.
JSON export
sanitized site/data payload
Static pages
261 generated routes
Submission audit
0 leak findings
Public graph
homepage + scPortal linked
B
Cohort analytics
Cohort analytics
Data-driven summaries rendered directly in the Next.js export; these panels replace the earlier placeholder chart cards.
6 restricted rows redacted publicly
Submission year timeline
Last 12 submission years represented in the public manifest.
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
Top tissues
Canonical tissue labels inferred from manifest and GEO text.
blood
36
other
24
unknown
20
tumor
19
lung
18
brain
12
stem cell
10
bone marrow
9
Modality balance
Benchmark design enforces equal scRNA/scATAC coverage.
scRNA
100
scATAC
100
C
Dataset browser
| ID | Modality | Species | Tissue | Cells |
|---|---|---|---|---|
| GSE115571 | scRNA | mouse | brain | 20K |
| GSE117988 | scRNA | human | pbmc | 12.9K |
| GSE120505 | scRNA | mouse | blood | 14.6K |
| GSE123813 | scRNA | human | tumor | 53K |
| GSE123902 | scRNA | human | lung | 42.8K |
D
Per-record provenance
GSE115571
Single-cell transcriptomics reveals distinct microglia signatures under inflammation
- Accession
- GSE115571
- Modality
- scRNA
- Species
- mouse
- Tissue
- brain
- Cells
- 19,998
- Release
- public
E
Methods and metrics
14
Graph encoders
attention and message passing
5
Graph builders
neighbourhood definitions
13
Baselines
external comparators
3
Metric suites
20 display metrics
F
Online resource integration
1
PeterPonyu homepage
Identity root lists scCCVGBen in the public graph route strip.
2
scPortal
Discovery hub connects datasets, benchmarks, models and public tools.
3
scCCVGBen resource
Static Next.js export serves searchable benchmark metadata and paper figures.