Datasets
200 benchmark records spanning scRNA and scATAC modalities (6 restricted-access rows redacted for public display).
scRNA100scATAC100
Showing 200 of 200 datasets
| Dataset ID↑ | Modality↕ | Species↕ | Tissue↕ | Cells↕ |
|---|---|---|---|---|
| ds-scrna-047 | scRNA | human | other | 5,780 |
| GSE115571 | scRNA | mouse | brain | 19,998 |
| GSE117988 | scRNA | human | pbmc | 12,874 |
| GSE120446 | scRNA | human | bone_marrow | 90,653 |
| GSE120505 | scRNA | mouse | blood | 14,588 |
| GSE120926 | scRNA | human | tumor | 102,525 |
| GSE123813 | scRNA | human | tumor | 53,030 |
| GSE123902 | scRNA | human | lung | 42,847 |
| GSE124310 | scRNA | human | tumor | 27,796 |
| GSE125449 | scRNA | human | liver | 5,115 |
| GSE128033 | scRNA | human | immune | 737,280 |
| GSE130148 | scRNA | human | lung | 10,360 |
| GSE130430 | scRNA | human | bone_marrow | 886 |
| GSE130646 | scRNA | human | muscle | 2,876 |
| GSE132188 | scRNA | mouse | other | 2,531 |
| GSE132509 | scRNA | human | pbmc | 39,375 |
| GSE138709 | scRNA | human | liver | 33,991 |
| GSE138794 | scRNA | human | brain | 2,888 |
| GSE139324 | scRNA | human | hnscc | 1,725 |
| GSE139555 | scRNA | human | tcell | 7,462 |
| GSE141259 | scRNA | mouse | lung | 24,882 |
| GSE142653 | scRNA | human | other | 5,181 |
| GSE143423 | scRNA | human | brain | 12,196 |
| GSE144024 | scRNA | human | stem_cell | 9,485 |
| GSE145926 | scRNA | human | balf | 6,249 |
| GSE145929 | scRNA | mouse | bladder | 61,014 |
| GSE148215 | scRNA | human | stem_cell | 10,110 |
| GSE148218 | scRNA | human | tumor | 50,747 |
| GSE149655 | scRNA | human | tumor | 13,060 |
| GSE149655-2 | scRNA | human | airway | 4,397 |
| GSE149689 | scRNA | human | blood | 85,144 |
| GSE151530 | scRNA | human | liver | 56,721 |
| GSE154778 | scRNA | human | pancreas | 585 |
| GSE155109 | scRNA | human | tumor | 8,433 |
| GSE155249 | scRNA | human | breast | 3,595 |
| GSE158803 | scRNA | human | neural | 1,092 |
| GSE159519 | scRNA | human | lung | 13,229 |
| GSE161277 | scRNA | human | kidney | 2,947 |
| GSE162454 | scRNA | human | liver | 8,894 |
| GSE163484 | scRNA | mouse | brain | 8,203 |
| GSE163558 | scRNA | human | stomach | 2,866 |
| GSE164378 | scRNA | human | pbmc | 161,764 |
| GSE165784 | scRNA | human | retina | 11,492 |
| GSE165844 | scRNA | mouse | bone_marrow | 19,791 |
| GSE166635 | scRNA | human | brain | 16,077 |
| GSE167118 | scRNA | human | brain | 3,273 |
| GSE167597 | scRNA | mouse | brain | 16,042 |
| GSE168181 | scRNA | mouse | tumor | 23,556 |
| GSE173193 | scRNA | human | adipose | 7,829 |
| GSE175814 | scRNA | human | lung | 6,223 |
| GSE181061 | scRNA | human | kidney | 108,421 |
| GSE181388 | scRNA | human | muscle | 22,157 |
| GSE183904 | scRNA | human | tumor | 62,035 |
| GSE185538 | scRNA | rat | embryo | 24,573 |
| GSE186344 | scRNA | human | bladder | 2,228 |
| GSE188676 | scRNA | mouse | retina | 22,360 |
| GSE189070 | scRNA | mouse | brain | 103,446 |
| GSE189357 | scRNA | human | lung | 45,938 |
| GSE189357-2 | scRNA | human | colon | 15,216 |
| GSE190604 | scRNA | human | ovary | 103,805 |
| GSE192857 | scRNA | human | stem_cell | 11,067 |
| GSE193807 | scRNA | human | skin | 8,647 |
| GSE197177 | scRNA | human | gut | 21,560 |
| GSE198730 | scATAC | mouse | stem_cell | 5,010 |
| GSE198730-2 | scATAC | mouse | stem_cell | 5,000 |
| GSE205506 | scRNA | human | neuro | 1,666 |
| GSE208074 | scRNA | human | brain | 8,048 |
| GSE213337 | scRNA | mouse | pancreas | 8,631 |
| GSE213469 | scATAC | mouse | unknown | — |
| GSE213740 | scRNA | human | other | 23,871 |
| GSE216175 | scATAC | human | unknown | — |
| GSE216673 | scRNA | human | brain | 13,867 |
| GSE220297 | scRNA | pig | blood | 9,721 |
| GSE220840 | scRNA | human | stem_cell | 4,913 |
| GSE222002 | scRNA | mouse | tumor | 78,315 |
| GSE222369 | scRNA | human | tumor | 138,805 |
| GSE225600 | scRNA | human | tumor | 81,683 |
| GSE225857 | scRNA | human | liver | 22,260 |
| GSE226131 | scRNA | mouse | bone_marrow | 15,793 |
| GSE226824 | scRNA | mouse | bone_marrow | 13,310 |
| GSE228499 | scRNA | human | tumor | 32,349 |
| GSE232938 | scRNA | human | stem_cell | 13,070 |
| GSE235063 | scRNA | human | thymus | 6,757 |
| GSE235787 | scRNA | human | tumor | 113,495 |
| GSE247719 | scRNA | mouse | muscle | 696,410 |
| GSE253355 | scRNA | human | bone_marrow | 99,846 |
| GSE253936 | scRNA | human | blood | 3,267 |
| GSE255019 | scRNA | mouse | bone_marrow | 22,602 |
| GSE260778 | scRNA | human | lung | 3,842 |
| GSE262288 | scRNA | human | tumor | 157,518 |
| GSE264586 | scRNA | human | kidney | 13,254 |
| GSE270891 | scRNA | human | stem_cell | 8,920 |
| GSE272457 | scRNA | human | unknown | 8,265 |
| GSE273423 | scRNA | human | blood | 7,226 |
| GSE274905 | scRNA | human | unknown | 30,634 |
| GSE275119 | scRNA | mouse | other | 6,764 |
| GSE279264 | scRNA | human | stem_cell | 12,071 |
| GSE280258 | scRNA | human | blood | 11,104 |
| GSE280767 | scRNA | human | blood | 11,645 |
| GSE283205 | scRNA | human | tumor | 16,506 |
| GSE283554 | scRNA | human | blood | 6,119 |
| GSE84133 | scRNA | human | pancreas | 8,569 |
| GSE95753 | scRNA | mouse | brain | 18,213 |
| GSE98638 | scRNA | human | liver | 5,063 |
| GSM5124061 | scATAC | human | pdx | 3,350 |
| GSM5402770 | scATAC | mouse | blood | 9,495 |
| GSM5402771 | scATAC | human | blood | 4,745 |
| GSM5766892 | scATAC | human | stem_cell | 4,901 |
| GSM5769453 | scATAC | zebrafish | other | 5,264 |
| GSM5769456 | scATAC | zebrafish | other | 4,320 |
| GSM5769461 | scATAC | zebrafish | other | 5,409 |
| GSM5769462 | scATAC | zebrafish | other | 3,267 |
| GSM5769463 | scATAC | zebrafish | other | 3,187 |
| GSM5975165 | scATAC | mouse | other | 3,805 |
| GSM5975166 | scATAC | mouse | other | 4,007 |
| GSM6044073 | scATAC | human | tumor | 3,268 |
| GSM6044075 | scATAC | human | liver | 6,617 |
| GSM6044076 | scATAC | human | liver | 3,329 |
| GSM6044077 | scATAC | human | liver | 5,280 |
| GSM6052781 | scATAC | mouse | skin | 8,016 |
| GSM6052782 | scATAC | mouse | skin | 7,714 |
| GSM6052783 | scATAC | mouse | skin | 7,896 |
| GSM6071618 | scATAC | human | unknown | — |
| GSM6214535 | scATAC | mouse | gut | 8,253 |
| GSM6449878 | scATAC | human | other | 3,179 |
| GSM6449880 | scATAC | human | pbmc | 3,303 |
| GSM6449881 | scATAC | human | blood | 3,473 |
| GSM6598797 | scATAC | mouse | unknown | — |
| GSM6638254 | scATAC | human | other | 7,990 |
| GSM6783751 | scATAC | human | other | 3,084 |
| GSM6783752 | scATAC | human | other | 3,722 |
| GSM7056609 | scATAC | mouse | other | 6,654 |
| GSM7062446 | scATAC | mouse | blood | 5,171 |
| GSM7062447 | scATAC | mouse | blood | 5,764 |
| GSM7062449 | scATAC | mouse | blood | 4,379 |
| GSM7062450 | scATAC | mouse | blood | 3,693 |
| GSM7064214 | scATAC | human | retina | 4,112 |
| GSM7064215 | scATAC | human | retina | 10,545 |
| GSM7064216 | scATAC | human | retina | 8,905 |
| GSM7064217 | scATAC | human | retina | 7,102 |
| GSM7308367 | scATAC | human | blood | 12,773 |
| GSM7308369 | scATAC | human | blood | 9,302 |
| GSM7471120 | scATAC | mouse | unknown | — |
| GSM7605339 | scATAC | mouse | unknown | — |
| GSM7734290 | scATAC | mouse | blood | 12,883 |
| GSM7734291 | scATAC | mouse | blood | 15,709 |
| GSM7734292 | scATAC | mouse | blood | 13,313 |
| GSM7734712 | scATAC | human | other | 7,028 |
| GSM7734715 | scATAC | human | other | 6,357 |
| GSM7734716 | scATAC | human | other | 5,754 |
| GSM7777060 | scATAC | human | blood | 5,814 |
| GSM7777061 | scATAC | human | blood | 4,074 |
| GSM7777062 | scATAC | human | blood | 6,433 |
| GSM7777063 | scATAC | human | blood | 6,819 |
| GSM7884540 | scATAC | human | blood | 5,876 |
| GSM7884541 | scATAC | human | blood | 9,868 |
| GSM7884543 | scATAC | human | retina | 9,640 |
| GSM7884545 | scATAC | human | blood | 7,682 |
| GSM7884549 | scATAC | human | blood | 9,041 |
| GSM7884550 | scATAC | human | blood | 6,390 |
| GSM7919028 | scATAC | mouse | unknown | — |
| GSM8002549 | scATAC | human | unknown | — |
| GSM8069371 | scATAC | human | unknown | — |
| GSM8196958 | scATAC | human | unknown | — |
| GSM8395368 | scATAC | mouse | unknown | — |
| GSM8397466 | scATAC | mouse | bone_marrow | 18,157 |
| GSM8397467 | scATAC | mouse | bone_marrow | 4,207 |
| GSM8462143 | scATAC | human | lung | 8,872 |
| GSM8462144 | scATAC | human | lung | 4,116 |
| GSM8462145 | scATAC | human | lung | 8,389 |
| GSM8462147 | scATAC | human | lung | 5,048 |
| GSM8517035 | scATAC | mouse | brain | 4,425 |
| GSM8546124 | scATAC | mouse | lung | 9,531 |
| GSM8546125 | scATAC | mouse | lung | 10,772 |
| GSM8685152 | scATAC | mouse | other | 27,166 |
| GSM8685155 | scATAC | mouse | other | 16,236 |
| GSM8685177 | scATAC | mouse | other | 22,409 |
| GSM8729707 | scATAC | human | other | 7,934 |
| GSM8757498 | scATAC | mouse | unknown | — |
| GSM8797342 | scATAC | mouse | unknown | — |
| GSM8852347 | scATAC | human | tumor | 3,147 |
| GSM8852348 | scATAC | human | tumor | 9,865 |
| GSM8852349 | scATAC | human | tumor | 16,176 |
| GSM8900548 | scATAC | mouse | lung | 20,005 |
| GSM8900549 | scATAC | mouse | lung | 16,778 |
| GSM8900550 | scATAC | mouse | lung | 15,701 |
| GSM8900551 | scATAC | mouse | lung | 20,020 |
| GSM8900553 | scATAC | mouse | lung | 14,346 |
| GSM8948080 | scATAC | human | unknown | — |
| GSM8997246 | scATAC | human | blood | 9,346 |
| GSM9039551 | scATAC | mouse | unknown | — |
| GSM9040799 | scATAC | mouse | unknown | — |
| GSM9045359 | scATAC | mouse | unknown | — |
| GSM9080087 | scATAC | human | unknown | — |
| restricted-scatac-001restricted | scATAC | human | blood | 3,134 |
| restricted-scatac-002restricted | scATAC | human | blood | 4,196 |
| restricted-scatac-003restricted | scATAC | human | blood | 6,718 |
| restricted-scatac-004restricted | scATAC | human | blood | 4,802 |
| restricted-scatac-005restricted | scATAC | human | blood | 3,020 |
| restricted-scatac-006restricted | scATAC | human | blood | 3,361 |