SCPortal
Datasets, continuity analysis, and benchmarks
Browse curated single-cell datasets, open the Continuity Explorer, and review LAIOR benchmark metrics in one place.
Dataset Browser
iAODE and LAIOR datasets
683 datasets across scATAC-seq and scRNA-seq.
Continuity Explorer
Open continuity views
Use the Continuity Explorer to compare PCA, UMAP, and t-SNE across simulated trajectories.
LAIOR Benchmarks
23 models, 24 metrics
Review benchmark results and metric definitions.
How to use these sites
Start at the project homepage, use SCPortal to choose a task, then open the site that fits it best.
Check the project overview, browse datasets or the Continuity Explorer in SCPortal, and open LAIOR or scCCVGBen when you want full benchmark details.
Homepage
See the project overview, open publications, and confirm where the linked tools and data come from.
Open homepage →SCPortal
Browse datasets, open the Continuity Explorer, and jump to the benchmark page you need.
You are hereLAIOR Benchmarks
Open LAIOR model summaries, dataset coverage, and metric definitions when you need benchmark detail.
Open benchmarks →scCCVGBen
Open the scCCVGBen companion site for paper benchmark results, method comparisons, metrics, and figures.
Open scCCVGBen →Choose your task
Start with what you want to do, then open the right page.
Use SCPortal to choose where to start, then continue to the page with the data, explorer, or benchmark detail you need.
Browse benchmark-ready datasets
Compare modality coverage, source repositories, and representative studies before opening the full dataset browsers.
Open next: iAODE Pages + LAIOR Benchmarks
Inspect trajectory continuity
Start with the Continuity Explorer in SCPortal, then open the iAODE explorer for full interactive analysis.
Open next: iAODE Pages
Understand metrics and rankings
Start with metric definitions and model categories, then continue into the benchmark pages for deeper LAIOR and scCCVGBen views.
Open next: LAIOR Benchmarks + scCCVGBen
Scan model families
Review the model catalog by use case before jumping to focused LAIOR and scCCVGBen model results.
Open next: LAIOR Benchmarks + scCCVGBen
Where to Start
Choose the dataset, model, continuity view, or benchmark page you need without guessing where to begin.
Dataset Collection
Browse curated single-cell ATAC-seq and RNA-seq datasets from the iAODE and LAIOR repositories in standardized 10X h5 format.
Continuity Explorer
Compare trajectory structures and continuity metrics across PCA, UMAP, and t-SNE views.
Evaluation Metrics
Review benchmark metrics for 23 single-cell analysis models across 66 datasets.
Model Catalog
Compare supported models, see what each category covers, and open the details you need.
Metrics Reference
Look up evaluation metric definitions and see when to use each one.
View MetricsDataset Statistics
Open dataset statistics and scan cell counts, peak counts, and distribution views.
View StatisticsData Modalities
Comprehensive coverage of single-cell omics data types